• Junchao Wang#; Ling Sun#; Nana Wei#; Yisheng Huang; Naiqian Zhang*; A semi-supervised Bayesian approach for marker gene trajectory inference from single-cell RNA-seq data, Bioinformatics, 2025, 41(9). (IF=5.4)
• Congcong Hu; Yunxiao Li; Longhui Li; Naiqian Zhang*; Xiaoqi Zheng*; BS-clock, advancing
epigenetic age prediction with high-resolution DNA methylation bisulfite sequencing data,
Bioinformatics, 2024, 40(11). (IF=5.4)
• Naiqian Zhang#*; Fubin Ma#; Dong Guo#; Yuxuan Pang; Chenye Wang; Yusen Zhang; Mingyi Wang*; A novel hypergraph model for identifying and prioritizing personalized drivers in cancer, PLoS Computational Biology, 2024, 20. (IF=3.6)
• Chenye Wang #; Junhai Shi#; Jiansheng Cai#; Yunsen Zhang; Xiaoqi Zheng; Naiqian Zhang*; DriverRWH: discovering cancer driver genes by random walk on a gene mutation hypergraph, BMC Bioinformatics, 2022,23. (IF=3.3)
• Jia Fei Liu; Dong Guo; En Ming Kang; Hai Yan Cong; Peng Liu; Naiqian Zhang*; Ming-Yi Wang*; Acute and chronic infection of H. pylori caused the difference in apoptosis of gastric epithelial cells, MICROBIAL PATHOGENESIS, 2021, 150. (IF=3.5)
• Chengchen Zhao#; Naiqian Zhang#; Yalin Zhang#; Nuermaimaiti Tuersunjiang; Shaorong Gao; Wenqiang Liu* and Yong Zhang*; A DNA methylation state transition model reveals the programmed epigenetic heterogeneity in human pre-implantation embryos, Genome biology, 2020,21(1). (IF=9.4)
• Xiaoqi Zheng#*, Naiqian Zhang#, Huajun Wu, Hao Wu*; Estimating and accounting for tumor purity in the analysis of DNA methylation data from cancer studies, Genome biology, 2017,18(1). (IF=9.4)
• Fayou Wang; Naiqian Zhang; Jun Wang; Hao Wu; Xiaoqi Zheng*; Tumor purity and differential methylation in cancer epigenomics, Briefings in Functional Genomics, 2016, 15(6). (IF=2.5)
• Naiqian Zhang#, Huajun Wu#, Weiwei Zhang, Jun Wang, Hao Wu*, X Zheng*: Predicting tumor purity from methylation microarray data, Bioinformatics, 2015,31(21):3401. (IF=5.4)
• Naiqian Zhang#; Haiyun Wang#; Yun Fang; Jun Wang*; Xiaoqi Zheng*; XS Liu*; Predicting anticancer drug responses using a duallayer integrated cell line-drug network model, PLoS Computational Biology, 2015, 11(9). (IF=3.6)
• Zuoli Dong#, Naiqian Zhang#, Chun Li, Haiyun Wang, Yun Fang, Jun Wang and Xiaoqi Zheng*; Anticancer drug sensitivity prediction in
cell lines from baseline gene expression through recursive feature selection, BMC Cancer, 2015,15. (IF=3.4)
